Publications of Tim Hohm

Peer-reviewed Conference and Journal Papers

[1 — hzs2010a]

T. Hohm, E. Zitzler, and R. Simon. A Dynamic Model for Stem Cell Homeostasis and Patterning in Arabidopsis Meristems. PLoS ONE, 5(2):e9189, 2010. (PDF) (doi) (bibtex)

[2 — wbhb2010a]

M. Woehrle, D. Brockhoff, T. Hohm, and S. Bleuler. Investigating Coverage and Connectivity Trade-offs in Wireless Sensor Networks: The Benefits of MOEAs. In M. Ehrgott et al., editors, Multiple Criteria Decision Making for Sustainable Energy and Transportation Systems (MCDM 2008), volume 634 of LNEMS, pages 211–221, Heidelberg, Germany, 2010. Springer. (bibtex)

[3 — hz2009b]

T. Hohm and E. Zitzler. A Multiobjective Evolutionary Algorithm for Numerical Parameter Space Characterization of Reaction Diffusion Systems. In V. Kadirkamanathan et al., editors, International Conference on Pattern Recognition in Bioinformatics (PRIB 2009), volume 5780 of LNBI, pages 162–174, Heidelberg, Germany, 2009. Springer. (PDF) (doi) (bibtex) (online access)

[4 — hz2009c]

T. Hohm and E. Zitzler. Multicellular Pattern Formation: Parameter Estimation for ODE-based Gene Regulatory Network Models. IEEE Eng Med Biol, 28(4):52–57, 2009. (PDF) (bibtex) (suppl. material) Overall best paper award at PRIB '07

[5 — hz2009a]

T. Hohm and E. Zitzler. Multiobjectivization for parameter estimation: a case-study on the segment polarity network of drosophila. In F. Rothlauf et al., editors, GECCO '09: Genetic and Evolutionary Computation Conference (GECCO 2009), pages 209–216, New York, NY, USA, 2009. ACM. (PDF) (doi) (bibtex)

[6 — hegb2008a]

T. Hohm, M. Egli, S. Gaehwiler, S. Bleuler, J. Feller, D. Frick, R. Huber, M. Karlsson, R. Lingenhag, T. Ruetimann, T. Sasse, T. Steiner, J. Stocker, and E. Zitzler. An Evolutionary Algorithm for the Block Stacking Problem. In N. Monmarché et al., editors, Evolution Artificielle 2007, volume 4926 of LNCS, pages 111–122, Berlin, Germany, 2008. Springer. (PDF) (doi) (bibtex) Best student paper award at EA '07

[7 — ghh2008a]

W. Gronwald, T. Hohm, and D. Hoffmann. Evolutionary Pareto-optimization of stably folding peptides. BMC Bioinformatics, 9(109), 2008. (PDF) (doi) (bibtex)

[8 — hz2007a]

T. Hohm and E. Zitzler. Modeling the Shoot Apical Meristem in A. thaliana: Parameter Estimation for Spatial Pattern Formation. In Elena Marchiori, Jason H. Moore, and Jagath C. Rajapakse, editors, Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (evoBIO 2007), volume 4447 of LNCS, pages 102–113. Springer, 2007. (PDF) (doi) (bibtex)

[9 — hlh2006a]

T. Hohm, P.Limbourg, and D. Hoffmann. A Multiobjective Evolutionary Method for the Design of Peptide Mimotopes. Journal of Computational Biology, 13(1):113–125, 2006. (doi) (bibtex)

[10 — hh2005a]

T. Hohm and D. Hoffmann. A multi-objective evolutionary approach to peptide structure redesign and stabilization. In H.-G. Beyer and U.-M. O'Reilly, editors, Genetic and Evolutionary Computation Conference (GECCO 2005), pages 423–429, New York, NY, USA, 2005. ACM Press. (PDF) (doi) (bibtex)

Technical Reports and Thesis

[1 — hzs2009b]

T. Hohm, E. Zitzler, and R. Simon. A dynamic model for stem cell homeostasis and patterning in Arabidopsis meristems. TIK Report 316, Computer Engineering and Networks Laboratory (TIK), ETH Zurich, 2009. under review at PLoS ONE. (PDF) (bibtex)

[2 — wbhb2008b]

M. Woehrle, D. Brockhoff, T. Hohm, and S. Bleuler. Investigating Coverage and Connectivity Trade-offs in Wireless Sensor Networks: The Benefits of MOEAs. TIK Report 294, Computer Engineering and Networks Laboratory (TIK), ETH Zurich, October 2008. (PDF) (bibtex)

[3 — wbh2007a]

M. Woehrle, D. Brockhoff, and T. Hohm. A New Model for Deployment Coverage and Connectivity of Wireless Sensor Networks. TIK-Report 278, Computer Engineering and Networks Laboratory (TIK), ETH Zurich, September 2007. (PDF) (bibtex)

[1 — hl2003a]

T. Hohm and P. Limbourg. Optimierung von Peptidsequenzen mittels multikriterieller Heuristiken – Berechnung der Peptidfaltung in gitterbasierten Modellen (in German). Master's thesis, Universität Dortmund, 2003. (PDF) (bibtex)